
//Example macro that does a diffusion analysis on a results table of tracking data
//The required format is as generated by the Manual Tracking plugin 
//http://rsbweb.nih.gov/ij/plugins/track/track.html
//assuming Results Table column headings; Track > Slice > X > Y
//It requires many tracks and many time points!
//Plots the cumulative mean squared displacement (MSD) per time point
//For a more accurate approach see the time ensemble average example

dis2 = 0;
for (i=0; igetResult("Track", i-1)) {setResult("Dis^2", i, 0);} 
	
	else {
	B9 = getResult("X", i);
	B8 = getResult("X", i-1);
	C9 = getResult("Y", i);
	C8 = getResult("Y", i-1);
	disx=(B9-B8)*(B9-B8);
	disy=(C9-C8)*(C9-C8);
	dis2 = (disx+disy);
	setResult("Dis^2", i, dis2);
		}
	}
}
updateResults;

//get last slice
maxslice = 0;
for (b=0; bmaxslice)
    {
     maxslice = getResult("Slice",b);
    	}
    	else{};
}

//get first slice
minslice = maxslice;
for (c=0; c