====== TTorg (Transverse tubular system regularity analysis) ======

===== Introduction =====
The TTorg plugin uses microscopy images (usually opened with the Bio-formats plugin) to analyze the organization level and the regularity of the transverse tubular system in muscle cells. 
\\ This is an automated analysis, the TTorg interface uses a minimum set of options to reduce human intervention.
\\ A complete description can be found in the above publication.

{{http://pccv.univ-tours.fr/ImageJ/TTorg/img/fft.png?800x500}}

===== Author =====
Francois Gannier (francois.gannier at univ-tours.fr)\\ Come Pasqualin (come.pasqualin at univ-tours.fr)

===== Publication =====
If you need to cite the plugin, please do so by citing the following paper: \\ \\ 
"AUTOMATIC QUANTITATIVE ANALYSIS OF T-TUBULE ORGANIZATION IN CARDIAC MYOCYTES USING IMAGEJ"\\ Côme Pasqualin, François Gannier, Claire O Malecot, Pierre Bredeloux, Véronique Maupoil.\\ American Journal of Physiology - Cell Physiology, Vol. 308, Issue 3, pages C237-C245. February 2015.\\ \\ Paper can be viewed here : [[http://ajpcell.physiology.org/content/308/3/C237]]

===== Download =====
The latest release of this plugin can be downloaded from here: [[http://pccv.univ-tours.fr/ImageJ/TTorg/]]
\\ The source code can be found [[https://github.com/PCCV/TTorg | on github]].

===== Installation =====
Download and unpack TTorg.zip in a TTorg subfolder inside the plugins folder, then restart ImageJ. A TT button should appear in toolset's bar. If not Select "Striation Analysis Menu" in Plugins/TTorg to add button. 

===== Licence =====
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation ([[http://www.gnu.org/licenses/gpl.txt]])\\ 
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.