Colorizes selections listed in the ROI Manager by matching measurements to a color of a lookup table (LUT), generating particle-size heat maps. It complements the Analyze>Analyze Particles…
command. ROI Color Coder is part of the BAR.
ImageJ 1.46h or later. Use Help>Update ImageJ…
to upgrade to a newer version.
ROI_Color_Coder.ijm
from GitHub (direct link).ImageJ/plugins/
or Fiji.app/plugins/
folder (or subfolder).ROI Color Coder
will be listed in the Plugins>
menu after running Help>Refresh Menus
.ImageJ/luts/
directory with a numeric prefix (e.g. '00-Gold.lut') to have them listed first in the LUT dropdown menuMore»Labels…
commandFlatten [F]
command to obtain an RGB image with the overlay rendered as pixel data. The image overlay is also embedded when saving the image in PNG or JPEG format (File>Save As>
submenu) Edit>Color>Edit LUT
command.Plugins
menu, ROI Color Coder can be called from other macros, e.g.:run("ROI Color Coder", "measurement=Area lut=Ice width=10 opacity=80");
— Tiago Ferreira 2014/06/19 23:10