// open image open(""); // some options in Manager3D Options, select Plugins/Record to record run("3D Manager Options", "volume surface compactness fit_ellipse 3d_moments integrated_density std_dev_grey_value mode_grey_value feret minimum_grey_value maximum_grey_value distance_to_surface bounding_box sync distance_between_centers=10 distance_max_contact=1.80"); // run the manager 3D and add image run("3D Manager"); Ext.Manager3D_AddImage(); // do some measurements, save measurements and close window Ext.Manager3D_Measure(); Ext.Manager3D_SaveResult("M","/home/thomasb/Results3D.csv"); Ext.Manager3D_CloseResult("M"); // Use Q for the Quantification window, D for distances, C for colocalisation, L or V for list voxels and A for A windows // if list is not visible please refresh list by using Deselect //Ext.Manager3D_Select(0); //Ext.Manager3D_DeselectAll();