ImageJ Documentation Wiki

Segmentation and classification for 3D datasets.

• Jaza Gul-Mohammed (jgulmoha at snv dot jussieu dot fr)
• Ignacio Arganda-Carreras (Ignacio dot Arganda at versailles dot inra dot fr)
• Philippe Andrey (Philippe dot Andrey at versailles dot inra dot fr)
• Vincent Galy (vincent dot galy at snv dot jussieu dot fr)
• Thomas Boudier (thomas dot boudier at snv dot jussieu dot fr) corresponding author.

Generic classification-based segmentation. A manual is available here. A tutorial (for a older version) is available here .

The plugin is available here. External required libraries are :

• 3D Viewer, the version used by the plugin is here.
• ImageScience library, please download it from here.
• WEKA, the version used by the plugin is available here.
• 3D Suite, the version used by the plugin is here.

J. GulMohammed, I. Arganda-Carreras, P. Andrey, V. Galy, T. Boudier. A Generic method for detection and classification of nuclei in 3D images of early embryos. (2014) BMC Bioinformatics 15:9. doi:10.1186/1471-2105-15-9. http://www.biomedcentral.com/1471-2105/15/9

G.P.L, sources plugin are available on request.