plugin:3d:rules-based_segmentation_and_tracking_4d_of_c._elegans_early_embryogenesis:start
Table of Contents
Generic 3D segmentation and classification in biological development
Segmentation and classification for 3D datasets.
Authors
- Jaza Gul-Mohammed (jgulmoha at snv dot jussieu dot fr)
- Ignacio Arganda-Carreras (Ignacio dot Arganda at versailles dot inra dot fr)
- Philippe Andrey (Philippe dot Andrey at versailles dot inra dot fr)
- Vincent Galy (vincent dot galy at snv dot jussieu dot fr)
- Thomas Boudier (thomas dot boudier at snv dot jussieu dot fr) corresponding author.
Description
Generic classification-based segmentation. A manual is available here. A tutorial (for a older version) is available here .
Download
The plugin is available here. External required libraries are :
- ImageScience library, please download it from here.
Citation
J. GulMohammed, I. Arganda-Carreras, P. Andrey, V. Galy, T. Boudier. A Generic method for detection and classification of nuclei in 3D images of early embryos. (2014) BMC Bioinformatics 15:9. doi:10.1186/1471-2105-15-9. http://www.biomedcentral.com/1471-2105/15/9
License
G.P.L, sources plugin are available on request.
plugin/3d/rules-based_segmentation_and_tracking_4d_of_c._elegans_early_embryogenesis/start.txt · Last modified: 2019/04/12 13:13 by 127.0.0.1