3D processing and analysis
Performs 3D filtering and analysis in 3D
This package comprises various plugins to perform 3D operations on gray-levels stacks :
- 3D filters (mean, median, minimum, maximum, local maxima, tophat, variance, sobel, experimental adaptive)
- 3D Roi manager (use with 3D object counter)
- 3D main axes
- 3D cross-correlation between two images
- 3D sphere creation
- 3D bandpass and 3D FHT (FFT equivalent)
- 3D crop
- 3D radial analysis
Copy the files ij3d-bin.jar and ima3d_.jar into your plugins directory. The file ij3d-api.jar contains the API for developers.
3D filters are also available as JNI (fast version in C) : 3D JNI filters .
A introduction tutorial to 3D Processing and Analysis is available in the tutorial section.
Reference : if you use this plugin in your research, please cite :
E. Iannuccelli, F. Mompart, J. Gellin, Y. Lahbib, M. Yerle et T. Boudier. NEMO: a tool for analyzing gene and chromosome territory distributions from 3D-FISH experiments. Bioinformatics Jan. 14, 2010.
Contact me for any questions or suggestions thomas.boudier@snv.jussieu.fr
| Filename | Filesize | Last modified |
|---|---|---|
| 3dmanager-2.png | 41.0 KiB | 2019/04/12 13:17 |
| ij3d-api.jar | 342.1 KiB | 2019/04/12 13:17 |
| ij3d-bin.jar | 539.3 KiB | 2019/04/12 13:17 |
| ima3d_.jar | 605.1 KiB | 2019/04/12 13:17 |
| scripts3d.zip | 8.0 KiB | 2019/04/12 13:17 |
