ImageJ Documentation Wiki

This plugin adds 3D tools to ImageJ.

Thomas Boudier

The plugin comprises tools for 3D drawing :

• Drawing 3D line
• Drawing 3D ellipsoids in any direction
• Drawing in stacks as volumes
• Drawing in 3D viewer as surfaces

A 3D crop is available (cubic or spherical cropping), it works also with a list of points in the RoiManager to automatically crop all positions and save them.

A 3D radial distribution is available, it computes the mean value of pixel in surrounding spherical layers.

A plugin to draw contours of 3D objects, using a 3D labeled image as input.

3D random ellipsoids : Macro

For details go to the 3D ImageJ Suite.

GPL distribution (see license).

• 24/10/2013 core V2.7 : plugin to draw slices of 3D objects
• 27/04/2015 core V3.1 : bug in colocalisation (rare objects configuration) + improved split + poles in ellipsoid fitting