Table of Contents
Perkin Elmer Plugin
PlugIn to import/open PerkinElmer UltraViewRS and ERS RAW-files.
Introduction
Author
Arne. Seitz
Advanced Light Microscopy Facility
European Molecular Biology Laboratory
Heidelberg
Features
Description
PE Panel
either Plugins–>PerkinElmer
or File –>Import
This opens a panel with four buttons. The functionality of each is described below.
Open…
This opens the raw files acquired with a PerkinElmer UltraView (E)RS.
The parameters (e.g. number of channels, number of slices, number of time points) of the image series are read from the cfg/tim file. The raw-files are imported into a stack and afterwards automatically converted to an Image5D stack.
Z-project…
This opens the raw files acquired with a PerkinElmer UltraView (E)RS.
The parameters (e.g. number of channels, number of slices, number of time points) of the image series are read from the cfg/tim file. The raw-files are imported into a stack and a Maximum Intensity Projection along the z-axis is performed for every time point and every channel. The resulting image-stack is converted to an Image5D stack.
Batch Z-projection…
You have to select a folder. The plugins works with all subfolders of this folder if they contain raw data from an PerkinElmer UltraView (E)RS. The images of every folder are opened, a maximum intensity projection along the z-axis is performed and the resulting stack (one image per channel and time point) is saved as TIFF-stack (if you checked the tick box for saving in addition you also have the option to convert the resulting stack to 8-Bit).
File Info
Opens a window where you can find the meta information to the loaded image.
Just let me know if you have any ideas/needs for further plugins dealing with data import/handling of PerkinElmer UltraView (E)RS files.If you have problems in installing/using the plugins just let me know.
Installation
In addition to this plugin you also must have the Image5D plugin installed.
Download
License
no info available
Changelog
no info available
Known Bugs
Please also don't hesitate to report bugs: bugreport/suggestions
— Arne Seitz 2008/09/24 15:33