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plugin:utilities:tapas_tutorial:create_your_processing_pipeline:start

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plugin:utilities:tapas_tutorial:create_your_processing_pipeline:start [2019/09/11 07:30] tboudierplugin:utilities:tapas_tutorial:create_your_processing_pipeline:start [2020/04/02 05:54] (current) tboudier
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 The first module should always be an input module, to load data from OMERO or a folder (please have a look to this [[plugin:utilities:tapas_tutorial_:input_output_i:start|tutorial on Input/Output]]).  The first module should always be an input module, to load data from OMERO or a folder (please have a look to this [[plugin:utilities:tapas_tutorial_:input_output_i:start|tutorial on Input/Output]]). 
  
-In this tutorial we will start by **denoising** the image by using a 3D median filter. Select the module **filters**. This module has 3 parameters, the radius in XY, radius in Z and the name of the filter. A list of modules with description of parameters is available {{:plugin:stacks:3d_ij_suite:tapasdescription.pdf|here}}. You can change parameters if you want, the list of available parameters are : median, mean, tophat, open, close, min and max. Then just click on **create text** to create the corresponding text for this module, in our case it is simply :+In this tutorial we will start by **denoising** the image by using a 3D median filter. Select the module **filters**. This module has 3 parameters, the radius in XY, radius in Z and the name of the filter. A list of modules with description of parameters is available {{:plugin:stacks:3d_ij_suite:tapasdescription0.51.pdf|here}}. You can change parameters if you want, the list of available parameters are : median, mean, tophat, open, close, min and max. Then just click on **create text** to create the corresponding text for this module, in our case it is simply :
 <code> <code>
 process:filters process:filters
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 <code> <code>
 // use the module filters with default values // use the module filters with default values
-process:3dfilters+process:filters
 </code>  </code> 
  
plugin/utilities/tapas_tutorial/create_your_processing_pipeline/start.1568179847.txt.gz · Last modified: 2019/09/11 07:30 by tboudier

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