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--- plugin:utilities:tapas_tutorial:measurement:start [2019/04/19 08:41] – created admin
+++ plugin:utilities:tapas_tutorial:measurement:start [2019/09/11 07:45] (current) – tboudier
@@ Line 9: / Line 9: @@
 ===== Basic usage =====
-TAPAS is focusing on 3D measurements, while most of 3D measurements are still valid in 2D, such 3D measurements should be used with caution with 2D data.
+TAPAS is focusing on 3D measurements, while most of 3D measurements are still valid in 2D, some 3D measurements should be used with caution with 2D data.
 The basic module for measurement is **measurement**, it requires a labeled image, with all individual objects having their own value. If your image is not labeled yet, please refer to this [[plugin:utilities:tapas_tutorial_:segmentation:start|tutorial on segmentation]].
@@ Line 28: / Line 28: @@
 // do the measurement of objects in the image
 // save results in temporary file, here user home directory
+// as output file for results
+// we use the name of the image being processed
+// followed by -results.csv
 process:measurement
 dir:?home?
@@ Line 46: / Line 49: @@
 ===== Advanced usage =====
-In this section we will write a full processing pipeline abd see how to focus on only the biggest object in the image and get rid of all smaller objects.
+In this section we will write a full processing pipeline and see how to focus on only the biggest object in the image and get rid of all smaller objects.
 We will use **t1-head** as example.
@@ Line 56: / Line 59: @@
 process:input
-// 3d median filter
+// median filter
-process:3dfilters
+process:filters
 filter:median
-radx:2
+radxy:2
-rady:2
 radz:2
@@ Line 80: / Line 82: @@
 process:measurement
 dir:?home?
-file:?name?.csv
+file:?name?-results.csv
 list:volume,compactness,ellipsoid
 </code>
@@ Line 95: / Line 97: @@
 process:input
-// 3d median filter
+// median filter
-process:3dfilters
+process:filters
 filter:median
-radx:2
+radxy:2
-rady:2
 radz:2