A visual scripting interface for ImageJ and its usage at the microscopy platform Montpellier RIO Imaging

A rapid image analysis application development framework called “Cell Image Analyzer” based on ImageJ is presented. It adds a visual scripting interface to ImageJ's capabilities, which allows creating applications from existing operations by drag and drop. It provides support to create batch applications as well as interactive applications. “Cell Image Analyzer” is used at the microscopy facility Montpellier RIO Imaging to create custom image analysis applications and to solve automation tasks. The applications include the topics “DNA combing”, “quantification of stained proteins in cells”, “comparison of intensity ratios between nuclei and cytoplasm” and “counting nuclei stained in different channels”.

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http://www.mri.cnrs.fr/index.php?m=38

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