plugin:utilities:tapas:list_of_available_modules:start
LIST OF TAPAS
| Name and description | Parameters | Comments/default | Online |
| INPUT/OUTPUT | |||
| input:load from Omero | project:name or unique part of project name dataset:name or unique part of dataset name name:name of the data (change to image?) channel:the channel number frame:the frame number |
(should be first process) project:?project? dataset: ?dataset? name:?name? channel:?channel? frame:?frame? |
No |
| link:create a link to an image in Omero | project:name of project dataset:name of dataset name:name of the data channel:the channel number frame:the frame number link:the name of the link |
project:?project? dataset: ?dataset? name:?name? channel:?channel? frame:?frame? |
No |
| omero:save the current image in Omero | project:name of project dataset:name of dataset name:name of the data |
project:?project? dataset: ?dataset? Will replace previous version if the image if present |
No |
| load:load an image as a file | dir:directory file:file name |
(for file) (for dir) |
No |
| sequence:load a sequence of 2D images from a directory | dir:directory name:part of file names dimension:dimension of the sequence |
(for file) (for dir) name:* for all files in directory dimension:Z for 3D sequence or T for temporal sequence Will automatically exclude system files and not image files |
No |
| composite:merge channels to create a composite or RGB image | dir:directory list:list of files rgb:create rgb image (yes) or composite (no) |
(for file) (for dir) rgb:no |
No |
| save:save an image as a file | dir:directory file:name of the file |
(for file) (for dir) |
Yes |
| attach:attach a list of files to a data in Omero | project:name of project dataset:name of dataset name:name of the data dir:directory of the files to be attached list:list of files names separated by , |
project:?project? dataset:?dataset? name:?name? |
No |
| delete:delete a list of files | dir:directory of the files to be deleted list:list of files names separated by , format:file format to save |
(for file) (for dir) format:tif by default, else can be zip |
No |